U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX14535349: RNA-seq of Mus musculus: adult female bone
1 ILLUMINA (Illumina HiSeq 2000) run: 68.8M spots, 13.9G bases, 2Gb downloads

Design: centrifuged bone
Submitted by: Mayo Clinic
Study: A New Gene Set Identifies Senescent Cells and Predicts Senescence-Associated Pathways Across Tissues
show Abstracthide Abstract
Although cellular senescence drives multiple age-related co-morbidities through the senescence-associated secretory phenotype (SASP), in vivo senescent cell identification remains challenging. Here, we generated a gene set (SenMayo) and validated its enrichment in bone biopsies from two aged human cohorts. We further demonstrated reductions in SenMayo in bone following genetic clearance of senescent cells in mice and in adipose tissue from humans following pharmacological senescent cell clearance. We next used SenMayo to identify senescent hematopoietic or mesenchymal cells at the single cell level from human and murine bone marrow/bone scRNA-seq data. Thus, SenMayo identifies senescent cells across tissues and species with high fidelity. Using this senescence panel, we were able to characterize senescent cells at the single cell level and identify key intercellular signaling pathways. SenMayo also represents a potentially clinically applicable panel for monitoring senescent cell burden with aging and other conditions as well as in studies of senolytic drugs.
Sample: JF34_count
SAMN26853344 • SRS12332460 • All experiments • All runs
Organism: Mus musculus
Library:
Name: 34
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 68.8M spots, 13.9G bases, 2Gb
Run# of Spots# of BasesSizePublished
SRR1840145168,834,55113.9G2Gb2022-06-06

ID:
20739983

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...